PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RVF1V
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 403aa    MW: 46029.9 Da    PI: 4.5923
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RVF1VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23.1e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d++++ ++sws++++sfvv+++ +fa+++Lp++Fkh+nf+SF+RQLn+YgFkkv+ e+         weF+++ F +g+ + +++i+
   Aradu.RVF1V  14 FLAKTYEMVDDPSTDPIVSWSASNRSFVVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFKKVDPEQ---------WEFANDDFVRGQPHRMKNIH 101
                   9********************999****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Aradu.RVF1V 102 RRKP 105
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-38397IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.76E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDEAQSSSNS LPPFLAKTYE MVDDPSTDPI VSWSASNRSF VVWNPPDFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFKKVDPE QWEFANDDFV RGQPHRMKNI HRRKPVHSHS LQNLQAQAPL  120
TESERMSLQD EIERLNREKE QLLMELQRHE QEWQEYEIRI HCSKDRVEKM EQKHQKMISS  180
VSSVLQKPGI DLNQLALLET TDRKRRLPRS GYLSDETNIE DTTETEQMLP TENSQDTSVL  240
TIITEQLDQL ESSMVFWETI SNDISDTTIH IHSSLDFDES TSCADSLSIS CPLLDIEVLP  300
KSSGIDMNSE PASAPVSEPA SASKEQAAGT TPVVVGVNDV FWEQFLTENP GSSEAQEVQS  360
ERKYHDTSKG EGKPSDPGKF WWNMRNTSNL PEQIGHVSQA EKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23910324129Heat shock factor protein 1
5d5v_B2e-23910324129Heat shock factor protein 1
5d5v_D2e-23910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206DRKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958115.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotO494031e-120HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLR9R6C40.0R9R6C4_9FABA; Heat stress transcription factor A-4a-like protein
STRINGGLYMA08G12630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-114HSF family protein